Resources GN 550 2020-09-23T20:13:22+00:00

Conservation Genetics – GN 550

Lecture
Tuesday/Thursday 11:45 to 1:00 pm

Syllabus Spring 2017

Personal Information Form to fill out

Syllabus Handouts

  • 1 – Information on the Genomic Research Project
  • 2 – How to write up and present a Research Project (3a and 3b)
  • 3 – Writing Genomic Research Project Guidelines 

Syllabus Readings

(note this doesn’t include readings for the Case Studies)

  • 1 – How to write an effective manuscript
  • 2 – See readings under Genetic Sampling Methods and Genomic Sampling methods in the google drive
  • 3 – Genomic Toolkit readings Overall and Local Adaptation

Case Studies

  • Case Study I: Information and Reading
  • Case Study II: Information and Reading
  • Case Study III: Information and Reading
  • Case Study IV: Information and Readings

Problem Sets

  • Problem Set I and Key
  • Problem Set 2 and Key
  • Problem Set 3 and Key
  • Problem Set 4  and Key

Midterm

  • Take home midterm and Key

Lecture Resources

  • Slides Lecture 1 Introduction to Variation
  • Slides for Lecture 2 HWE and Genetic Variation and Lecture 2 notes
  • Slides for Lecture 3A Genetic Drift ; Slides for Lecture 3B Genetic Drift & Ne; and Lecture 3A&B Notes
  • Slides for Lecture 4 Natural Selection and Lecture 4 Notes
  • Slides for Lecture 5A Population Subdivision P1 and Lecture 5A Notes 
  • Slides for Lecture 5B Population Subdivision P2 and Lecture 5B Notes
  • Slides for Lecture 6A Multiple Loci and Lecture 6A Notes
  • Slides for Lecture 6B QTL and Lecture Notes QTL  
  • Slides for Lecture 7  and Lecture 7 Notes Inbreeding  
  • Slides for Lecture 8A Demography
  • Slides for Lecture 8B Metapopulation&Fragmentation
  • Slides for Lecture 8C Landscape Genetics
  • Slides for Lecture 9 Hybrids
  • Slides for Lecture 10 Invasive Species
  • Slides for Lecture 11 Population Genetic Toolkit and Lecture 11 Notes 
  • Slides for Lecture 12 Population Genomic Toolkit
  • Slides for Research Project

Microsatellite Lab 

  • Information slides
  • Microsatellite Lab & writeup, Microsatellite Lab Key
  • Background reading- Burford 2009
  • Structure Manual PDF

Wet Labs

  • DNA extraction lab
  • Genomic library building wetlab
  • Library building protocol

Flounder Genomic Project

  • Information slides on the flounder project
  • Bioinformatic Lab Slides DAY 1
  • Bioinformatic Lab Slides DAY 2
  • Flounder popgen background paper – Wang Et Al_2015
  • Flounder Bioinformatic Pipeline Lab, Flounder Bioinformatic Pipeline Lab KEY
  • Background reading on ddRADseq- Burford Reiskind et al. 2016

Conservation Genetic Papers

Links

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